algorithms pymol delano Search Results


algorithms pymol delano  (ATCC)
95
ATCC algorithms pymol delano
Algorithms Pymol Delano, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/algorithms pymol delano/product/ATCC
Average 95 stars, based on 1 article reviews
algorithms pymol delano - by Bioz Stars, 2026-03
95/100 stars
  Buy from Supplier
pymol version 2.1  (DeLano Scientific LLC PyMOL)
90
DeLano Scientific LLC PyMOL pymol version 2.1
Pymol Version 2.1, supplied by DeLano Scientific LLC PyMOL, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/pymol version 2.1/product/DeLano Scientific LLC PyMOL
Average 90 stars, based on 1 article reviews
pymol version 2.1 - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
algorithms cluspro  (ATCC)
97
ATCC algorithms cluspro
Algorithms Cluspro, supplied by ATCC, used in various techniques. Bioz Stars score: 97/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/algorithms cluspro/product/ATCC
Average 97 stars, based on 1 article reviews
algorithms cluspro - by Bioz Stars, 2026-03
97/100 stars
  Buy from Supplier
pymol  (DeLano Scientific)
90
DeLano Scientific pymol
Pymol, supplied by DeLano Scientific, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/pymol/product/DeLano Scientific
Average 90 stars, based on 1 article reviews
pymol - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
ds 2.0  (DeLano Scientific)
90
DeLano Scientific ds 2.0
Ds 2.0, supplied by DeLano Scientific, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/ds 2.0/product/DeLano Scientific
Average 90 stars, based on 1 article reviews
ds 2.0 - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
pdb files  (MathWorks Inc)
90
MathWorks Inc pdb files
Pdb Files, supplied by MathWorks Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/pdb files/product/MathWorks Inc
Average 90 stars, based on 1 article reviews
pdb files - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
pymol software  (DeLano Scientific LLC PyMOL)
90
DeLano Scientific LLC PyMOL pymol software
Pymol Software, supplied by DeLano Scientific LLC PyMOL, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/pymol software/product/DeLano Scientific LLC PyMOL
Average 90 stars, based on 1 article reviews
pymol software - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
pymol version 0.99rc6  (DeLano Scientific LLC PyMOL)
90
DeLano Scientific LLC PyMOL pymol version 0.99rc6
Based on the scaffold ubiquitin (shown here in cartoon representation), in particular with an F45W substitution, a library for the selection of artificial binding proteins was generated. For this purpose the six surface-exposed amino acid residues K6, L8, R42, I44, H68 and V70 (highlighted in red), located in the beta-sheet region of the scaffold, were chosen to be randomized for library construction. After in vitro selection against TNF-alpha, in the ubiquitin variant named 10F the residues D58 and Y59 (highlighted in blue) were found deleted. This figure was generated using pdb entry 1UBI and the software PyMOL version <t>0.99rc6</t> (DeLano Scientific LLC, South San Francisco, CA).
Pymol Version 0.99rc6, supplied by DeLano Scientific LLC PyMOL, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/pymol version 0.99rc6/product/DeLano Scientific LLC PyMOL
Average 90 stars, based on 1 article reviews
pymol version 0.99rc6 - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
pymol molecular graphing software version 1.8.6.0  (DeLano Scientific LLC PyMOL)
90
DeLano Scientific LLC PyMOL pymol molecular graphing software version 1.8.6.0
Based on the scaffold ubiquitin (shown here in cartoon representation), in particular with an F45W substitution, a library for the selection of artificial binding proteins was generated. For this purpose the six surface-exposed amino acid residues K6, L8, R42, I44, H68 and V70 (highlighted in red), located in the beta-sheet region of the scaffold, were chosen to be randomized for library construction. After in vitro selection against TNF-alpha, in the ubiquitin variant named 10F the residues D58 and Y59 (highlighted in blue) were found deleted. This figure was generated using pdb entry 1UBI and the software PyMOL version <t>0.99rc6</t> (DeLano Scientific LLC, South San Francisco, CA).
Pymol Molecular Graphing Software Version 1.8.6.0, supplied by DeLano Scientific LLC PyMOL, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/pymol molecular graphing software version 1.8.6.0/product/DeLano Scientific LLC PyMOL
Average 90 stars, based on 1 article reviews
pymol molecular graphing software version 1.8.6.0 - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
origin7.0  (OriginLab corp)
90
OriginLab corp origin7.0
Based on the scaffold ubiquitin (shown here in cartoon representation), in particular with an F45W substitution, a library for the selection of artificial binding proteins was generated. For this purpose the six surface-exposed amino acid residues K6, L8, R42, I44, H68 and V70 (highlighted in red), located in the beta-sheet region of the scaffold, were chosen to be randomized for library construction. After in vitro selection against TNF-alpha, in the ubiquitin variant named 10F the residues D58 and Y59 (highlighted in blue) were found deleted. This figure was generated using pdb entry 1UBI and the software PyMOL version <t>0.99rc6</t> (DeLano Scientific LLC, South San Francisco, CA).
Origin7.0, supplied by OriginLab corp, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/origin7.0/product/OriginLab corp
Average 90 stars, based on 1 article reviews
origin7.0 - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
pymol visualization software  (DeLano Scientific LLC PyMOL)
90
DeLano Scientific LLC PyMOL pymol visualization software
Based on the scaffold ubiquitin (shown here in cartoon representation), in particular with an F45W substitution, a library for the selection of artificial binding proteins was generated. For this purpose the six surface-exposed amino acid residues K6, L8, R42, I44, H68 and V70 (highlighted in red), located in the beta-sheet region of the scaffold, were chosen to be randomized for library construction. After in vitro selection against TNF-alpha, in the ubiquitin variant named 10F the residues D58 and Y59 (highlighted in blue) were found deleted. This figure was generated using pdb entry 1UBI and the software PyMOL version <t>0.99rc6</t> (DeLano Scientific LLC, South San Francisco, CA).
Pymol Visualization Software, supplied by DeLano Scientific LLC PyMOL, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/pymol visualization software/product/DeLano Scientific LLC PyMOL
Average 90 stars, based on 1 article reviews
pymol visualization software - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier
prism version 9.0.0  (GraphPad Software Inc)
90
GraphPad Software Inc prism version 9.0.0
Based on the scaffold ubiquitin (shown here in cartoon representation), in particular with an F45W substitution, a library for the selection of artificial binding proteins was generated. For this purpose the six surface-exposed amino acid residues K6, L8, R42, I44, H68 and V70 (highlighted in red), located in the beta-sheet region of the scaffold, were chosen to be randomized for library construction. After in vitro selection against TNF-alpha, in the ubiquitin variant named 10F the residues D58 and Y59 (highlighted in blue) were found deleted. This figure was generated using pdb entry 1UBI and the software PyMOL version <t>0.99rc6</t> (DeLano Scientific LLC, South San Francisco, CA).
Prism Version 9.0.0, supplied by GraphPad Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/prism version 9.0.0/product/GraphPad Software Inc
Average 90 stars, based on 1 article reviews
prism version 9.0.0 - by Bioz Stars, 2026-03
90/100 stars
  Buy from Supplier

Image Search Results


Based on the scaffold ubiquitin (shown here in cartoon representation), in particular with an F45W substitution, a library for the selection of artificial binding proteins was generated. For this purpose the six surface-exposed amino acid residues K6, L8, R42, I44, H68 and V70 (highlighted in red), located in the beta-sheet region of the scaffold, were chosen to be randomized for library construction. After in vitro selection against TNF-alpha, in the ubiquitin variant named 10F the residues D58 and Y59 (highlighted in blue) were found deleted. This figure was generated using pdb entry 1UBI and the software PyMOL version 0.99rc6 (DeLano Scientific LLC, South San Francisco, CA).

Journal: PLoS ONE

Article Title: New Binding Mode to TNF-Alpha Revealed by Ubiquitin-Based Artificial Binding Protein

doi: 10.1371/journal.pone.0031298

Figure Lengend Snippet: Based on the scaffold ubiquitin (shown here in cartoon representation), in particular with an F45W substitution, a library for the selection of artificial binding proteins was generated. For this purpose the six surface-exposed amino acid residues K6, L8, R42, I44, H68 and V70 (highlighted in red), located in the beta-sheet region of the scaffold, were chosen to be randomized for library construction. After in vitro selection against TNF-alpha, in the ubiquitin variant named 10F the residues D58 and Y59 (highlighted in blue) were found deleted. This figure was generated using pdb entry 1UBI and the software PyMOL version 0.99rc6 (DeLano Scientific LLC, South San Francisco, CA).

Article Snippet: For the ubiquitin library generation, six amino acid positions of the scaffold were selected for randomization based on an analysis of involvement in natural interactions of ubiquitin , in silico algorithms calculating the stability effects of amino acid substitutions , and visual inspection using the open source software PyMOL version 0.99rc6 (DeLano Scientific LLC, South San Francisco, CA).

Techniques: Selection, Binding Assay, Generated, In Vitro, Variant Assay, Software